PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447648.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 211aa    MW: 23354 Da    PI: 6.1543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00125981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C + F ++  L  H++ H
  XP_016447648.1 59 FSCNFCRRKFYSSQALGGHQNAH 81
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-65786No hitNo description
PROSITE profilePS5015711.1985986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKPPNFNLES EDESEQDSMP VTLDLTLGFN SSDPELNANG ETSDEVVPHP PTAALSRIFS  60
CNFCRRKFYS SQALGGHQNA HKRERTLAKR AMRMGMLSDR YASLASLPLH GAAFRSLGVE  120
AHASMHQRVS YQETLTHASR GGARFEQGYF GMPVFVEDDE VEMFWPGSFR QVEGIGGNQR  180
FNSGQGSNIN FVAVAPQTRT DPSLPDLNLK L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-116HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447648.11e-158PREDICTED: zinc finger protein 4-like
SwissprotQ392631e-48ZFP4_ARATH; Zinc finger protein 4
TrEMBLM1CVW71e-136M1CVW7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000758981e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-50zinc finger protein 4